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User Documentation:

  • User Documentation
    • Installation
    • Quickstart Guide
      • Workflows
        • EDS compositional analysis for phase identification
        • Fit and quantify EDS spectra
        • Measure particle size distribution via SEM
        • Quantify the extent of intermixing in precursor powders
    • Tutorials
      • GUI tutorials
        • Tutorial: Get started with the AutoEMX GUI
        • Tutorial: EDS compositional analysis for phase identification in the GUI
        • Tutorial: Fit and quantify individual spectra in the GUI
      • Script tutorials
        • Tutorial: EDS compositional analysis for phase identification
        • Tutorial: Fit and quantify individual spectra acquired with AutoEMX
        • Tutorial: Fit and quantify individual spectra exported by commercial EDS software
        • Tutorial: Quantify externally exported spectra in batch
        • Tutorial: Measure particle size distribution via SEM
        • Tutorial: Quantify the extent of intermixing in precursor powders
    • Topic Guides
      • Quantification flags (quant_flag)
        • Flag meanings
        • How to use them
      • Clustering modes
        • Clustering algorithms
        • Geometries
        • Zeros and trace elements (Aitchison)
        • How 'auto' chooses
        • Examples
        • Which setting to use
      • Number of clusters
        • Step 1: single-cluster check
        • Step 2: choosing k
        • Step 3: merging clusters
        • Setting k yourself
        • Reading the result
      • Mixture decomposition
        • The idea
        • Reading the results
        • Plots
        • Things to keep in mind
        • Changing the defaults
    • AutoEMX Public API
      • autoemx.config package
        • Submodules
      • autoemx.runners package
        • Submodules

Maintainer Documentation:

  • Maintainer Documentation
    • EDS Detector Calibration
    • EDS Experimental Standard Collection
    • Calibrate a new Detector for EDS fit and quantification
    • Add new Electron Microscope Driver
    • AutoEMX Public API
      • autoemx.XSp_calibs package
      • autoemx.EM_driver package
        • Submodules
      • autoemx.core package
        • Subpackages
        • Submodules
AutoEMX
  • Overview: module code

All modules for which code is available

  • autoemx.config.runtime_configs
  • autoemx.data.Xray_absorption_coeffs
  • autoemx.data.Xray_lines
  • autoemx.runners.analyze_sample
  • autoemx.runners.batch_acquire_and_analyze
  • autoemx.runners.batch_acquire_experimental_stds
  • autoemx.runners.batch_fit_spectra
  • autoemx.runners.batch_quantify_and_analyze
  • autoemx.runners.collect_particle_statistics
  • autoemx.runners.fit_and_quantify_spectrum
  • autoemx.utils.helper

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