All modules for which code is available
- autoemx.calibrations
- autoemx.config.ledger_io
- autoemx.config.runtime_configs
- autoemx.config.schema_models.acquisition
- autoemx.config.schema_models.clustering
- autoemx.config.schema_models.detector_model
- autoemx.config.schema_models.fitting
- autoemx.config.schema_models.frames
- autoemx.config.schema_models.ledger
- autoemx.config.schema_models.legacy_size_stats
- autoemx.config.schema_models.particle_stats
- autoemx.config.schema_models.quantification
- autoemx.config.schema_models.segmentation
- autoemx.config.schema_models.standards
- autoemx.core.composition_analysis.analyser
- autoemx.core.composition_analysis.clustering
- autoemx.core.composition_analysis.clustering_plot_axes
- autoemx.core.composition_analysis.ledger
- autoemx.core.composition_analysis.plotting
- autoemx.core.composition_analysis.reference_matching
- autoemx.core.composition_analysis.standards
- autoemx.core.em_runtime.controller
- autoemx.core.em_runtime.drift_correction
- autoemx.core.em_runtime.frame_navigator
- autoemx.core.em_runtime.image_utilities
- autoemx.core.em_runtime.microscope_controller
- autoemx.core.em_runtime.particle_finder
- autoemx.core.em_runtime.particle_segmentation_models
- autoemx.core.em_runtime.particle_segmentation_models.SAM2
- autoemx.core.em_runtime.particle_segmentation_models._instance_filters
- autoemx.core.em_runtime.particle_segmentation_models.microSAM
- autoemx.core.em_runtime.particle_segmentation_models.segmentation_model_template
- autoemx.core.em_runtime.sample_finder
- autoemx.core.em_runtime.spectrum_acquisition
- autoemx.core.em_runtime.xsp_spot_selection
- autoemx.core.fitter.background
- autoemx.core.fitter.detector_response
- autoemx.core.fitter.fast_model_eval
- autoemx.core.fitter.fitter
- autoemx.core.fitter.peak_identification
- autoemx.core.fitter.peaks
- autoemx.core.particle_outlines
- autoemx.core.particle_statistics
- autoemx.core.quantifier.corrections
- autoemx.core.quantifier.peak_overlaps
- autoemx.core.quantifier.quant_flags
- autoemx.core.quantifier.quantifier
- autoemx.core.saved_frames
- autoemx.data.Xray_absorption_coeffs
- autoemx.data.Xray_lines
- autoemx.microscope_drivers
- autoemx.runners.analyze_sample
- autoemx.runners.annotate_particle_images
- autoemx.runners.batch_acquire_and_analyze
- autoemx.runners.batch_acquire_experimental_stds
- autoemx.runners.batch_fit_experimental_stds
- autoemx.runners.batch_fit_spectra
- autoemx.runners.batch_quantify_and_analyze
- autoemx.runners.calibrate_detector_model
- autoemx.runners.calibrate_peak_sigma_params
- autoemx.runners.calibrate_peak_weights_experimental_standard
- autoemx.runners.collect_particle_statistics
- autoemx.runners.extract_experimental_standards_details
- autoemx.runners.fit_and_quantify_spectrum
- autoemx.runners.fit_and_quantify_spectrum_from_ledger
- autoemx.runners.modify_standards_file
- autoemx.runners.process_particle_statistics
- autoemx.runners.publish_standards
- autoemx.runners.quantify_external_spectra
- autoemx.runners.reanalyze_particle_statistics
- autoemx.runners.reinitialize_ledger
- autoemx.runners.set_active_analysis
- autoemx.utils.helper
- autoemx.utils.install_segmentation
- autoemx.utils.legacy.ledger_bootstrap
- autoemx.utils.legacy.legacy_backfill
- autoemx.utils.legacy.legacy_config_loader
- autoemx.utils.legacy.legacy_standards
- autoemx.utils.legacy.spectrum_pointer_writer
- autoemx.utils.plotting_helpers
- autoemx.utils.unimodality