Maintainer Documentation

Welcome to the AutoEMX maintainer documentation. Here you will find how to set up AutoEMX on a new microscope (detector calibration, experimental standards, detector and microscope drivers) and the advanced API.

• EDS Detector Calibration
  • How it works
  • Setting up the script
  • Running the script
  • Where the calibrations are saved
• EDS Experimental Standard Collection
  • Choosing the standards
  • Collecting the standards
  • Where the reference values are saved
  • Managing the standards
• Calibrate a new Detector for EDS fit and quantification
  • The detector model
  • Calibration procedure
    • Peak width
    • Peak shape
    • Background
    • Fine-tuning factors
• Add new Electron Microscope Driver
  • Start from the Phenom XL driver
  • What AutoEMX uses from the driver
  • Testing the driver
• AutoEMX Advanced API
  • autoemx.core package
    • Subpackages
    • Submodules
  • autoemx.calibrations package
    • ensure_standards_model()
    • load_detector_model()
    • microscope_driver_name()
    • load_microscope_calibrations()
    • load_latest_detector_channel_params()
    • get_latest_detector_channel_params()
    • update_detector_channel_params()
    • load_standards_model()
    • load_standards()
  • autoemx.microscope_drivers package
    • load_microscope_driver()
    • get_active_driver_module()
    • connect_to_microscope()
    • is_microscope_connected()
    • Submodules
  • autoemx.data package
    • Subpackages
  • autoemx.utils package
    • Subpackages
    • Submodules