autoemx.utils package

Created on Wed Dec 17 18:06:04 2025

@author: Andrea

Subpackages

• autoemx.utils.legacy package
  • Submodules
    • autoemx.utils.legacy.ledger_bootstrap module
      • strip_min_background_comment_phrase()
      • convert_machine_to_pixel_coordinates()
      • load_legacy_acquisition_details_by_spectrum_id()
      • load_legacy_quantification_results_by_spectrum_id()
      • build_legacy_import_quantification_config()
      • build_legacy_msa_pointer_writer()
      • build_legacy_background_pointer_writer()
      • resolve_legacy_bootstrap_configs()
      • load_or_create_ledger_with_legacy_data_csv()
      • create_analyzer_ledger_from_legacy_data_csv()
    • autoemx.utils.legacy.legacy_backfill module
      • backfill_spectra_from_data_csv()
      • load_ledger_configs_from_legacy_json()
    • autoemx.utils.legacy.legacy_config_loader module
      • get_legacy_data_csv_path()
      • has_legacy_data_csv()
      • load_legacy_configurations_from_json()
    • autoemx.utils.legacy.legacy_standards module
      • is_legacy_standards_payload()
      • migrate_legacy_standards_payload()
      • normalize_standards_file_payload()
      • load_legacy_standards_dict_as_model()
      • standards_payload_to_model()
    • autoemx.utils.legacy.spectrum_pointer_writer module
      • load_vendor_msa_template_lines()
      • write_spectrum_pointer_file()

Submodules

• autoemx.utils.constants module
• autoemx.utils.helper module
  • Utility Functions for EDS Spectrum Analysis and Data Handling
    • Main Features
  • atomic_to_weight_fr()
  • composition_as_weight_dict()
  • weight_to_atomic_fr()
  • to_latex_formula()
  • print_nice_1d_row()
  • print_element_fractions_table()
  • print_single_separator()
  • print_double_separator()
  • AlphabetMapper
    • AlphabetMapper.get_letter()
  • make_unique_path()
  • get_sample_dir()
  • load_msa()
  • parse_xsp_spots_image_name()
  • draw_scalebar()
  • Prompt_User
    • Prompt_User.press_ok()
    • Prompt_User.stop_execution()
    • Prompt_User.run()
  • RefLineError
  • EMError
  • EDSError
• autoemx.utils.install_segmentation module
  • MICRO_SAM_REQUIREMENTS
  • EXCLUDED
  • install_commands()
  • gpl_packages_installed()
  • main()
• autoemx.utils.plotting_helpers module
  • load_custom_plot_template()
  • write_custom_plot_template()
  • refresh_custom_plot_template_file()
  • ensure_custom_plot_file()
• autoemx.utils.unimodality module
  • dip_statistic()
  • dip_test()