autoemx.config package
Created on Wed Dec 17 18:02:47 2025
@author: Andrea
Subpackages
- autoemx.config.schema_models package
- Submodules
- autoemx.config.schema_models.acquisition module
- autoemx.config.schema_models.clustering module
- autoemx.config.schema_models.detector_model module
- autoemx.config.schema_models.fitting module
- autoemx.config.schema_models.frames module
- autoemx.config.schema_models.ledger module
- autoemx.config.schema_models.legacy_size_stats module
- autoemx.config.schema_models.particle_stats module
- autoemx.config.schema_models.quantification module
- autoemx.config.schema_models.segmentation module
- autoemx.config.schema_models.standards module
- Submodules
Submodules
- autoemx.config.defaults module
- autoemx.config.ledger_io module
create_sample_ledger()ingest_spectra()load_sample_ledger()get_active_quantification_config()LedgerRuntimeConfigsLedgerRuntimeConfigs.microscope_cfgLedgerRuntimeConfigs.sample_cfgLedgerRuntimeConfigs.measurement_cfgLedgerRuntimeConfigs.sample_substrate_cfgLedgerRuntimeConfigs.plot_cfgLedgerRuntimeConfigs.powder_meas_cfgLedgerRuntimeConfigs.bulk_meas_cfgLedgerRuntimeConfigs.quant_cfgLedgerRuntimeConfigs.clustering_cfgLedgerRuntimeConfigs.active_quant_config
ledger_runtime_configs()save_sample_ledger()
- autoemx.config.ledger_schemas module
- autoemx.config.runtime_configs module
MicroscopeConfigMicroscopeConfig.IDMicroscopeConfig.typeMicroscopeConfig.detector_typeMicroscopeConfig.is_auto_BCMicroscopeConfig.brightnessMicroscopeConfig.contrastMicroscopeConfig.energy_zeroMicroscopeConfig.bin_widthMicroscopeConfig.ALLOWED_TYPESMicroscopeConfig.ALLOWED_DETECTOR_TYPESMicroscopeConfig.model_config
SampleConfigSampleConfig.elementsSampleConfig.typeSampleConfig.w_frsSampleConfig.center_posSampleConfig.half_width_mmSampleConfig.ALLOWED_TYPESSampleConfig.POWDER_SAMPLES_TYPESSampleConfig.is_powder_sampleSampleConfig.ROUGH_SURFACE_TYPESSampleConfig.is_surface_roughSampleConfig.GRID_ACQUISITION_TYPESSampleConfig.is_grid_acquisitionSampleConfig.PARTICLE_ACQUISITION_TYPESSampleConfig.is_particle_acquisitionSampleConfig.model_config
SampleSubstrateConfigSampleSubstrateConfig.elementsSampleSubstrateConfig.typeSampleSubstrateConfig.shapeSampleSubstrateConfig.auto_detectionSampleSubstrateConfig.stub_w_mmSampleSubstrateConfig.ALLOWED_TYPESSampleSubstrateConfig.ALLOWED_SHAPESSampleSubstrateConfig.ALLOWED_AUTO_DETECTION_TYPESSampleSubstrateConfig.model_config
MeasurementConfigMeasurementConfig.typeMeasurementConfig.modeMeasurementConfig.working_distanceMeasurementConfig.working_distance_toleranceMeasurementConfig.beam_energy_keVMeasurementConfig.beam_currentMeasurementConfig.emergence_angleMeasurementConfig.is_manual_navigationMeasurementConfig.max_acquisition_timeMeasurementConfig.target_acquisition_countsMeasurementConfig.min_n_spectraMeasurementConfig.max_n_spectraMeasurementConfig.powder_meas_cfgMeasurementConfig.bulk_meas_cfgMeasurementConfig.exp_stds_cfgMeasurementConfig.saved_images_extensionMeasurementConfig.save_raw_imagesMeasurementConfig.annotate_particle_imagesMeasurementConfig.ALLOWED_IMAGE_EXTENSIONSMeasurementConfig.PARTICLE_STATS_MEAS_TYPE_KEYMeasurementConfig.ALLOWED_TYPESMeasurementConfig.model_config
QuantificationOptionsConfigQuantificationOptionsConfig.DEFAULT_MIN_TOTAL_COUNTS_FRACTIONQuantificationOptionsConfig.methodQuantificationOptionsConfig.spectrum_limsQuantificationOptionsConfig.fit_toleranceQuantificationOptionsConfig.use_instrument_backgroundQuantificationOptionsConfig.use_project_specific_std_dictQuantificationOptionsConfig.min_total_counts_fractionQuantificationOptionsConfig.is_known_phase_mixtureQuantificationOptionsConfig.identify_missing_elementsQuantificationOptionsConfig.identification_seed_spectraQuantificationOptionsConfig.identification_z_rangeQuantificationOptionsConfig.identification_excluded_elementsQuantificationOptionsConfig.ALLOWED_METHODSQuantificationOptionsConfig.model_config
PowderMeasurementConfigPowderMeasurementConfig.DEFAULT_PAR_SEGMENTATION_MODELPowderMeasurementConfig.AVAILABLE_SPOT_SELECTION_MODESPowderMeasurementConfig.AVAILABLE_PAR_SELECTIONPowderMeasurementConfig.par_selection_modePowderMeasurementConfig.img_shift_trackingPowderMeasurementConfig.par_search_frame_width_umPowderMeasurementConfig.max_n_par_per_framePowderMeasurementConfig.max_spectra_per_parPowderMeasurementConfig.max_area_parPowderMeasurementConfig.min_area_parPowderMeasurementConfig.par_mask_marginPowderMeasurementConfig.xsp_spots_distance_umPowderMeasurementConfig.par_spot_selection_modePowderMeasurementConfig.par_segmentation_modelPowderMeasurementConfig.par_brightness_threshPowderMeasurementConfig.par_segmentation_paramsPowderMeasurementConfig.par_xy_spots_threshPowderMeasurementConfig.par_feature_selectionPowderMeasurementConfig.par_spot_spacingPowderMeasurementConfig.min_par_pixelsPowderMeasurementConfig.size_stats_plot_formatPowderMeasurementConfig.size_stats_ci_tolerancePowderMeasurementConfig.size_stats_ci_quantitiesPowderMeasurementConfig.size_stats_max_n_framesPowderMeasurementConfig.size_stats_max_time_minPowderMeasurementConfig.include_eds_auto_particlesPowderMeasurementConfig.AVAILABLE_PAR_SEGMENTATION_MODELSPowderMeasurementConfig.AVAILABLE_FEATURE_SELECTIONPowderMeasurementConfig.AVAILABLE_SPOT_SPACING_SELECTIONPowderMeasurementConfig.model_config
BulkMeasurementConfigExpStandardsConfigExpStandardsConfig.is_exp_std_measurementExpStandardsConfig.formulaExpStandardsConfig.els_to_use_for_mean_PB_calcExpStandardsConfig.generate_separate_std_dictExpStandardsConfig.min_acceptable_PB_ratioExpStandardsConfig.quant_flags_acceptedExpStandardsConfig.model_configExpStandardsConfig.formula_w_frs()
PlotConfigPlotConfig.show_unused_comps_clustPlotConfig.els_excluded_clust_plotPlotConfig.els_to_plotPlotConfig.show_legend_clusteringPlotConfig.save_plotsPlotConfig.show_plotsPlotConfig.use_custom_plotsPlotConfig.custom_plot_filePlotConfig.plot_best_mixturePlotConfig.intermixing_violin_plotsPlotConfig.model_config