Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W A add_device() (in module alab_management.device_view.device) add_devices_to_db() (DeviceView method) add_reroute_task() (in module alab_management.task_view.task) add_sample() (ExperimentBuilder method) add_sample_positions_to_db() (SampleView method) add_standalone_sample_position() (in module alab_management.sample_view.sample) add_task() (ExperimentBuilder method) (in module alab_management.task_view.task) (SampleBuilder method) add_to() (BaseTask method) alab_management module alab_management.alarm module alab_management.builders module alab_management.builders.experimentbuilder module alab_management.builders.samplebuilder module alab_management.config module alab_management.device_manager module alab_management.device_rpc_status module alab_management.device_view module alab_management.device_view.dbattributes module alab_management.device_view.device module alab_management.device_view.device_view module alab_management.experiment_cancel module alab_management.experiment_manager module alab_management.experiment_view module alab_management.experiment_view.completed_experiment_view module alab_management.experiment_view.experiment module alab_management.experiment_view.experiment_view module alab_management.lab_reset module alab_management.lab_view module alab_management.logger module alab_management.mcp_data_reports module alab_management.resource_manager module alab_management.resource_manager.enums module alab_management.resource_manager.resource_requester module alab_management.sample_view module alab_management.sample_view.analysis_view module alab_management.sample_view.completed_sample_view module alab_management.sample_view.sample module alab_management.sample_view.sample_view module alab_management.task_manager module alab_management.task_manager.task_manager module alab_management.task_view module alab_management.task_view.completed_task_view module alab_management.task_view.task module alab_management.task_view.task_enums module alab_management.task_view.task_view module alab_management.task_view.wait_messages module alab_management.user_input module AlabOSConfig (class in alab_management.config) Alarm (class in alab_management.alarm) alert() (Alarm method) AnalysisView (class in alab_management.sample_view.analysis_view) append() (ListInDatabase method) append_measurement() (SampleView method) apply_default_value() (DictInDatabase method) (ListInDatabase method) archive_experiments_to_completed() (in module alab_management.lab_reset) archive_terminal_experiments_missing_from_completed() (in module alab_management.lab_reset) args (BaseDevice attribute) as_normal_dict() (DictInDatabase method) B BaseDevice (class in alab_management.device_view.device) BaseTask (class in alab_management.task_view.task) block_sample_position() (SampleView method) C call() (DevicesClient method) call_tool() (in module alab_management.mcp_data_reports) cancel_experiment_software_state() (in module alab_management.experiment_cancel) CANCELABLE_LIVE_STATUS (TaskView attribute) CANCELABLE_PENDING_STATUS (TaskView attribute) CANCELED (RequestStatus attribute) CancelingProgress (class in alab_management.task_view.task_enums) cancellation_event (LabView property) CANCELLED (ExperimentStatus attribute) (TaskStatus attribute) CHARACTERIZATION_RESULT (LoggingType attribute) check_file_like_data() (LargeResult class method) check_if_stored() (LargeResult method) check_kind() (in module alab_management.sample_view.analysis_view) check_number_of_running_tasks() (TaskManager method) check_result_document() (in module alab_management.sample_view.analysis_view) claim() (AnalysisView method) claim_field() (AnalysisView static method) clean_up_sample_position_collection() (SampleView method) clean_up_tasks_from_previous_runs() (TaskManager method) clean_up_user_input_collection() (UserInputView method) cleanup_on_cancel (BaseTask attribute) clear() (DictInDatabase method) (ListInDatabase method) clear_lab_occupancy() (in module alab_management.lab_reset) clear_sample_in_transit() (SampleView method) close() (DeviceView method) CombinedTimeoutError COMPLETED (ExperimentStatus attribute) (TaskStatus attribute) CompletedExperimentView (class in alab_management.experiment_view.completed_experiment_view) CompletedSampleView (class in alab_management.sample_view.completed_sample_view) CompletedTaskView (class in alab_management.task_view.completed_task_view) connect() (BaseDevice method) CONNECTION_WATCH_INTERVAL (in module alab_management.device_view.device_view) content (DeviceRequest attribute) copy() (DictInDatabase method) (ListInDatabase method) count() (ListInDatabase method) create_device_wrapper() (DevicesClient method) create_experiment() (ExperimentView method) create_sample() (SampleView method) create_subtask() (TaskView method) create_task() (TaskView method) CRITICAL (LoggingLevel attribute) D dashboard_attributes (BaseDevice attribute) dashboard_base() (in module alab_management.mcp_data_reports) dashboard_experiment_status() (in module alab_management.experiment_view.experiment_view) data_source_query() (in module alab_management.sample_view.analysis_view) db_filter (DictInDatabase property) (ListInDatabase property) db_projection (DictInDatabase property) (ListInDatabase property) DBLogger (class in alab_management.logger) DEBUG (LoggingLevel attribute) DEFAULT_DEVICE_CONNECT_TIMEOUT (in module alab_management.device_view.device_view) default_wait_message() (in module alab_management.task_view.wait_messages) delete_data_report() (in module alab_management.mcp_data_reports) description (BaseDevice attribute) (BaseDevice property) (SamplePosition attribute) device (ResourceRequestItem attribute) device_exists_in_db() (DeviceView method) device_rpc_queue_name() (in module alab_management.device_rpc_status) DEVICE_SIGNAL (LoggingType attribute) DeviceConnectionError DeviceManager (class in alab_management.device_manager) DeviceManagerUnavailableError DeviceMethodCallState (class in alab_management.device_manager) DevicePauseStatus (class in alab_management.device_view.device_view) DeviceRequest (class in alab_management.resource_manager.resource_requester) DeviceRunningException DevicesClient (class in alab_management.device_manager) DeviceSignalEmitter (class in alab_management.device_view.device) DeviceTaskStatus (class in alab_management.device_view.device_view) DeviceView (class in alab_management.device_view.device_view) DeviceWrapper (class in alab_management.device_manager) DeviceWrapper.DeviceMethodWrapper (class in alab_management.device_manager) diagnose_sample_position_shortage() (SampleView method) dict_in_database() (BaseDevice method) DictInDatabase (class in alab_management.device_view.dbattributes) disconnect() (BaseDevice method) dismiss_lab_starting_user_input() (in module alab_management.device_rpc_status) dismiss_pending_requests() (UserInputView method) E EMPTY (SamplePositionStatus attribute) encode_task() (TaskView method) ensure_lab_starting_user_input() (in module alab_management.device_rpc_status) ERROR (DeviceTaskStatus attribute) (ExperimentStatus attribute) (LoggingLevel attribute) (RequestStatus attribute) (TaskStatus attribute) (UserRequestStatus attribute) execute_command() (DeviceView method) exists() (CompletedExperimentView method) (CompletedSampleView method) (CompletedTaskView method) (SampleView method) (TaskView method) ExperimentBuilder (class in alab_management.builders.experimentbuilder) ExperimentManager (class in alab_management.experiment_manager) ExperimentStatus (class in alab_management.experiment_view.experiment_view) ExperimentView (class in alab_management.experiment_view.experiment_view) extend() (ListInDatabase method) F FAILURE (MethodCallStatus attribute) FATAL (LoggingLevel attribute) file_like_data (LargeResult attribute) filter_device_signal() (DBLogger method) filter_log() (DBLogger method) FINISHING (TaskStatus attribute) format_error_report() (BaseTask method) format_message_to_codeblock() (in module alab_management.alarm) freeze_config() (in module alab_management.config) from_file_like_data() (LargeResult class method) from_kwargs() (BaseTask class method) from_local_file() (LargeResult class method) from_py_type() (SamplePositionRequest class method) from_str() (SamplePositionRequest class method) fromkeys() (DictInDatabase method) FULFILLED (RequestStatus attribute) FULLFILLED (UserRequestStatus attribute) future (DeviceMethodCallState attribute) G generate_input_file() (ExperimentBuilder method) get() (AlabOSConfig method) (DictInDatabase method) get_all() (DeviceView method) get_all_attributes() (DeviceView method) get_all_devices() (in module alab_management.device_view.device) get_all_devices_from_db() (DeviceView method) get_all_pending_requests() (UserInputView method) get_all_sample_positions_from_db() (SampleView method) get_all_standalone_sample_positions() (in module alab_management.sample_view.sample) get_all_tasks() (in module alab_management.task_view.task) get_all_tasks_from_db() (TaskView method) get_attribute() (DeviceView method) get_available_devices() (DeviceView method) get_available_sample_position() (SampleView method) get_claim() (AnalysisView method) get_concurrent_result() (ResourceRequester method) get_current_devices() (in module alab_management.device_view.device) get_current_standalone_sample_positions() (in module alab_management.sample_view.sample) get_data_report_rows() (in module alab_management.mcp_data_reports) get_device() (DeviceView method) get_device_by_name_from_db() (DeviceView method) get_device_rpc_status() (in module alab_management.device_rpc_status) get_devices_by_task() (DeviceView method) get_experiment() (CompletedExperimentView method) (ExperimentView method) get_experiment_by_sample_id() (ExperimentView method) get_experiment_by_task_id() (ExperimentView method) get_experiment_result() (in module alab_management.builders.experimentbuilder) get_experiment_status() (in module alab_management.builders.experimentbuilder) get_experiments_with_status() (ExperimentView method) get_in_transit_samples() (SampleView method) get_lab_idle_status() (in module alab_management.lab_reset) get_lab_readiness() (in module alab_management.device_rpc_status) get_latest_device_signal() (DBLogger method) get_locked_sample_positions() (LabView method) get_message() (BaseDevice method) (BaseTask method) (DeviceView method) get_methods_to_log() (DeviceSignalEmitter method) get_occupying_task_id() (BaseDevice method) get_paused_devices() (DeviceView method) get_pending_request_by_context() (UserInputView method) get_ready_tasks() (TaskView method) get_request() (RequestMixin method) (UserInputView method) get_requests_by_status() (RequestMixin method) get_requests_by_task_id() (RequestMixin method) get_sample() (LabView method) (SampleView method) get_sample_by_position() (SampleView method) get_sample_name_by_position() (SampleView method) get_sample_position() (SampleView method) get_sample_position_max_number_by_prefix() (SampleView method) get_sample_position_parent_device() (LabView method) (SampleView method) get_sample_position_status() (SampleView method) get_sample_positions_by_task() (SampleView method) get_sample_positions_names_by_device() (SampleView method) get_sample_positions_names_by_prefix() (SampleView method) get_samples_on_device() (DeviceView method) (SampleView method) get_status() (DeviceView method) (TaskView method) get_task() (CompletedTaskView method) (TaskView method) get_task_by_name() (in module alab_management.task_view.task) get_task_with_sample() (TaskView method) get_tasks_by_status() (TaskView method) get_tasks_to_be_canceled() (TaskView method) H handle_message() (in module alab_management.mcp_data_reports) handle_pending_experiments() (ExperimentManager method) handle_tasks_to_be_canceled() (TaskManager method) HIGH (TaskPriority attribute) I identifier (DeviceRequest attribute) (LargeResult attribute) IDLE (DeviceTaskStatus attribute) IN_PROGRESS (MethodCallStatus attribute) in_transit (Sample attribute) index() (ListInDatabase method) INFO (LoggingLevel attribute) INITIATED (TaskStatus attribute) input_data_sources() (in module alab_management.sample_view.analysis_view) InputExperiment (class in alab_management.experiment_view.experiment) insert() (ListInDatabase method) insert_request() (UserInputView method) is_blocked_position() (SampleView method) is_canceling() (TaskView method) is_cancelling() (LabView method) is_locked_position() (SampleView method) is_offline (BaseTask property) is_running() (BaseDevice method) is_sim_mode() (AlabOSConfig method) is_task_canceling() (BaseDevice method) is_unoccupied_position() (SampleView method) items() (DictInDatabase method) K keys() (DictInDatabase method) kwargs (BaseDevice attribute) L lab_ready_label() (in module alab_management.device_rpc_status) LabNotIdleError LabView (class in alab_management.lab_view) LargeResult (class in alab_management.task_view.task) last_position (Sample attribute) last_updated (DeviceMethodCallState attribute) list_data_reports() (in module alab_management.mcp_data_reports) list_in_database() (BaseDevice method) ListInDatabase (class in alab_management.device_view.dbattributes) local_path (LargeResult attribute) lock_exact_sample_positions() (LabView method) lock_sample_position() (LabView method) (SampleView method) LOCKED (SamplePositionStatus attribute) log() (DBLogger method) log_amount() (DBLogger method) log_characterization_result() (DBLogger method) log_device_signal() (DBLogger method) log_method_to_db() (DeviceSignalEmitter method) log_signal() (in module alab_management.device_view.device) LoggingLevel (class in alab_management.logger) LoggingType (class in alab_management.logger) LOW (TaskPriority attribute) M main() (in module alab_management.mcp_data_reports) mark_completed_experiments() (ExperimentManager method) mark_task_as_canceling() (TaskView method) metadata (InputExperiment attribute) (Sample attribute) method (DeviceWrapper.DeviceMethodWrapper property) MethodCallStatus (class in alab_management.device_manager) mock() (in module alab_management.device_view.device) model_computed_fields (DeviceRequest attribute) (InputExperiment attribute) (LargeResult attribute) (ResourceRequestItem attribute) (ResourcesRequest attribute) (SamplePositionRequest attribute) model_config (DeviceRequest attribute) (InputExperiment attribute) (LargeResult attribute) (ResourceRequestItem attribute) (ResourcesRequest attribute) (SamplePositionRequest attribute) model_fields (DeviceRequest attribute) (InputExperiment attribute) (LargeResult attribute) (ResourceRequestItem attribute) (ResourcesRequest attribute) (SamplePositionRequest attribute) module alab_management alab_management.alarm alab_management.builders alab_management.builders.experimentbuilder alab_management.builders.samplebuilder alab_management.config alab_management.device_manager alab_management.device_rpc_status alab_management.device_view alab_management.device_view.dbattributes alab_management.device_view.device alab_management.device_view.device_view alab_management.experiment_cancel alab_management.experiment_manager alab_management.experiment_view alab_management.experiment_view.completed_experiment_view alab_management.experiment_view.experiment alab_management.experiment_view.experiment_view alab_management.lab_reset alab_management.lab_view alab_management.logger alab_management.mcp_data_reports alab_management.resource_manager alab_management.resource_manager.enums alab_management.resource_manager.resource_requester alab_management.sample_view alab_management.sample_view.analysis_view alab_management.sample_view.completed_sample_view alab_management.sample_view.sample alab_management.sample_view.sample_view alab_management.task_manager alab_management.task_manager.task_manager alab_management.task_view alab_management.task_view.completed_task_view alab_management.task_view.task alab_management.task_view.task_enums alab_management.task_view.task_view alab_management.task_view.wait_messages alab_management.user_input move_sample() (LabView method) (SampleView method) must_be_bsonable() (InputExperiment class method) N name (BaseDevice attribute) (DeviceWrapper property) (InputExperiment attribute) (Sample attribute) (SamplePosition attribute) NEED_RELEASE (RequestStatus attribute) NORMAL (TaskPriority attribute) number (SamplePosition attribute) (SamplePositionRequest attribute) O OCCUPIED (DeviceTaskStatus attribute) (SamplePositionStatus attribute) occupy_device() (DeviceView method) on_cancel() (BaseTask method) on_message() (DeviceManager method) (DevicesClient method) OTHER (LoggingType attribute) P path (AlabOSConfig property) pause_all_devices() (DeviceManager method) (DeviceView method) pause_device() (DeviceView method) pause_handling_experiments() (ExperimentManager method) pause_new_task_launching() (TaskManager method) PAUSED (DevicePauseStatus attribute) PENDING (CancelingProgress attribute) (ExperimentStatus attribute) (MethodCallStatus attribute) (RequestStatus attribute) (UserRequestStatus attribute) pending_samples() (AnalysisView method) plot() (ExperimentBuilder method) pop() (DictInDatabase method) (ListInDatabase method) popitem() (DictInDatabase method) position (Sample attribute) position_history (Sample attribute) prefix (SamplePositionRequest attribute) preprocess() (ResourcesRequest class method) print_configuration() (Alarm method) priority (BaseTask property) (LabView property) prune_archived_unplaced_from_live() (in module alab_management.lab_reset) Q query_property() (DeviceView method) R READY (TaskStatus attribute) refresh_data_report() (in module alab_management.mcp_data_reports) register_data_report() (in module alab_management.mcp_data_reports) release() (AnalysisView method) release_all_resources() (LabView method) (ResourceRequester method) release_device() (DeviceView method) release_resources() (ResourceRequester method) release_sample_position() (LabView method) (SampleView method) RELEASED (DevicePauseStatus attribute) (RequestStatus attribute) remove() (ListInDatabase method) remove_device() (DeviceView method) (in module alab_management.device_view.device) remove_sample_position_by_prefix() (SampleView method) remove_standalone_sample_position() (in module alab_management.sample_view.sample) request_cleanup() (LabView method) request_devices() (DeviceView method) request_maintenance() (BaseDevice method) request_maintenance_input() (in module alab_management.user_input) request_resources() (LabView method) (ResourceRequester method) request_sample_positions() (SampleView method) request_user_input() (in module alab_management.user_input) (LabView method) request_user_input_with_note() (in module alab_management.user_input) (LabView method) RequestCanceledError REQUESTED (DevicePauseStatus attribute) REQUESTING_RESOURCES (TaskStatus attribute) RequestMixin (class in alab_management.resource_manager.resource_requester) RequestStatus (class in alab_management.resource_manager.enums) require_lab_ready_or_503() (in module alab_management.device_rpc_status) reset_current_device_registry() (in module alab_management.device_view.device) reset_current_standalone_sample_position_registry() (in module alab_management.sample_view.sample) reset_lab_software_state() (in module alab_management.lab_reset) ResourceRequester (class in alab_management.resource_manager.resource_requester) ResourceRequestItem (class in alab_management.resource_manager.resource_requester) ResourcesRequest (class in alab_management.resource_manager.resource_requester) result_field() (AnalysisView static method) result_specification (BaseTask property) retrieve() (LargeResult method) retrieve_signal() (BaseDevice method) (DeviceSignalEmitter method) retrieve_user_input() (UserInputView method) retrieve_user_input_with_note() (UserInputView method) reverse() (ListInDatabase method) root (ResourcesRequest attribute) run() (BaseTask method) (DeviceManager method) (ExperimentManager method) (TaskManager method) run_subtask() (BaseTask method) (LabView method) RUNNING (ExperimentStatus attribute) (TaskStatus attribute) S Sample (class in alab_management.sample_view.sample) SAMPLE_AMOUNT (LoggingType attribute) sample_id (Sample attribute) sample_positions (BaseDevice property) (ResourceRequestItem attribute) SampleBuilder (class in alab_management.builders.samplebuilder) SampleNotFoundError SamplePosition (class in alab_management.sample_view.sample) SamplePositionRequest (class in alab_management.sample_view.sample_view) SamplePositionStatus (class in alab_management.sample_view.sample_view) samples (BaseTask property) (InputExperiment attribute) SampleView (class in alab_management.sample_view.sample_view) save_all() (CompletedExperimentView method) save_experiment() (CompletedExperimentView method) save_sample() (CompletedSampleView method) save_task() (CompletedTaskView method) send_email() (Alarm method) send_slack_dm() (Alarm method) send_slack_notification() (Alarm method) SEPARATOR (SamplePosition attribute) set_all_attributes() (DeviceView method) set_attribute() (DeviceView method) set_item() (AlabOSConfig method) set_message() (BaseDevice method) (BaseTask method) (DeviceView method) (TaskView method) set_sample_in_transit() (LabView method) (SampleView method) set_task_actor_id() (TaskView method) setdefault() (DictInDatabase method) setup_email() (Alarm method) setup_slackbot() (Alarm method) sort() (ListInDatabase method) start() (DeviceSignalEmitter method) status (DeviceMethodCallState attribute) stop() (DeviceSignalEmitter method) storage_type (LargeResult attribute) store() (LargeResult method) submit() (ExperimentBuilder method) submit_ready_tasks() (TaskManager method) SUCCESS (MethodCallStatus attribute) sync_device_definitions() (DeviceView method) sync_device_status() (DeviceView method) SYSTEM (TaskPriority attribute) SYSTEM_LOG (LoggingType attribute) system_log() (DBLogger method) T tags (InputExperiment attribute) (Sample attribute) task_id (LabView property) (Sample attribute) task_type_exists_in_db() (TaskView method) TaskCancelledError TaskManager (class in alab_management.task_manager.task_manager) TaskPriority (class in alab_management.task_view.task_enums) tasks (InputExperiment attribute) (SampleBuilder property) TaskStatus (class in alab_management.task_view.task_enums) TaskView (class in alab_management.task_view.task_view) to_dict() (ExperimentBuilder method) (SampleBuilder method) try_to_mark_task_ready() (TaskView method) U unblock_all_sample_positions() (SampleView method) unblock_sample_position() (SampleView method) UNKNOWN (DeviceTaskStatus attribute) unpause_all_devices() (DeviceView method) unpause_device() (DeviceView method) update() (DictInDatabase method) update_canceling_progress() (TaskView method) update_data_report() (in module alab_management.mcp_data_reports) update_experiment_status() (ExperimentView method) update_request_status() (RequestMixin method) (UserInputView method) update_result() (LabView method) (TaskView method) update_sample_metadata() (LabView method) (SampleView method) update_sample_task_id() (ExperimentView method) (SampleView method) update_status() (TaskView method) update_subtask_result() (TaskView method) update_subtask_status() (TaskView method) update_task_dependency() (TaskView method) URGENT (TaskPriority attribute) UserInputView (class in alab_management.user_input) UserRequestStatus (class in alab_management.user_input) V validate() (BaseTask method) value_in_database() (in module alab_management.device_view.dbattributes) values() (DictInDatabase method) W WAITING (TaskStatus attribute) WARN (LoggingLevel attribute) WARNING (LoggingLevel attribute) WORKER_NOTIFIED (CancelingProgress attribute) write_result() (AnalysisView method)