autoemxsp package

Created on Thu Sep 18 13:30:06 2025

@author: Andrea

Subpackages

• autoemxsp.EM_driver package
  • load_microscope_driver()
  • Submodules
    • autoemxsp.EM_driver.PhenomXL module
      • Electron Microscope Driver
      • frame_rel_to_pixel_coords()
      • frame_pixel_to_rel_coords()
      • standby()
      • set_electron_detector_mode()
      • activate()
      • to_SEM()
      • set_high_tension()
      • set_beam_current()
      • get_EDS_analyser_object()
      • acquire_XS_spectral_data()
      • auto_focus()
      • auto_contrast_brightness()
      • adjust_focus()
      • move_to()
      • get_frame_width()
      • get_range_frame_width()
      • set_frame_width()
      • get_image_data()
      • set_brightness()
      • set_contrast()
      • get_current_wd()
      • to_nav()
      • get_navigation_camera_image()
• autoemxsp.XSp_calibs package
  • load_microscope_calibrations()
  • load_latest_detector_channel_params()
  • get_latest_detector_channel_params()
  • update_detector_channel_params()
  • load_standards()
• autoemxsp.config package
  • Submodules
    • autoemxsp.config.classes module
      • MicroscopeConfig
      • SampleConfig
      • SampleSubstrateConfig
      • MeasurementConfig
      • QuantConfig
      • PowderMeasurementConfig
      • BulkMeasurementConfig
      • ExpStandardsConfig
      • ClusteringConfig
      • PlotConfig
    • autoemxsp.config.defaults module
      • Defined Variables
• autoemxsp.core package
  • Subpackages
    • autoemxsp.core.particle_segmentation_models package
      • load_models()
      • Submodules
  • Submodules
    • autoemxsp.core.EMXSp_composition_analyser module
      • Example Usage
      • EMXSp_Composition_Analyzer
    • autoemxsp.core.EM_controller module
      • Main Classes
      • Example Usage
      • EM_Controller
      • EM_Sample_Finder
    • autoemxsp.core.EM_particle_finder module
      • Main Class
      • Example Usage
      • EM_Particle_Finder
    • autoemxsp.core.XSp_fitter module
      • Overview
      • Class Structure and Interactions
      • Typical Usage
      • Customization & Calibration
      • Dependencies
      • How the classes interact:
      • In short:
      • patch_lmfit_fast_mode()
      • XSp_Fitter
      • Peaks_Model
      • Background_Model
      • DetectorResponseFunction
    • autoemxsp.core.XSp_quantifier module
      • Class Structure and Interactions
      • Typical Usage
      • Customization & Calibration
      • Dependencies
      • How the classes interact
      • XSp_Quantifier
      • Quant_Corrections
• autoemxsp.data package
  • Subpackages
    • autoemxsp.data.Xray_absorption_coeffs package
      • xray_mass_absorption_coeff()
    • autoemxsp.data.Xray_lines package
      • X-ray Line Data Utilities
      • get_el_xray_lines()
      • Submodules
    • autoemxsp.data.mean_ionization_potentials package
• autoemxsp.runners package
  • Submodules
    • autoemxsp.runners.analyze_sample module
      • analyze_sample()
    • autoemxsp.runners.batch_acquire_and_analyze module
      • batch_acquire_and_analyze()
    • autoemxsp.runners.batch_acquire_experimental_stds module
      • batch_acquire_experimental_stds()
    • autoemxsp.runners.batch_fit_spectra module
      • Features
      • batch_fit_spectra()
    • autoemxsp.runners.batch_quantify_and_analyze module
      • batch_quantify_and_analyze()
    • autoemxsp.runners.collect_particle_statistics module
      • collect_particle_statistics()
    • autoemxsp.runners.fit_and_quantify_spectrum module
      • fit_and_quantify_spectrum()
• autoemxsp.utils package
  • Submodules
    • autoemxsp.utils.constants module
    • autoemxsp.utils.helper module
      • Utility Functions for EDS Spectrum Analysis and Data Handling
      • atomic_to_weight_fr()
      • weight_to_atomic_fr()
      • to_latex_formula()
      • print_nice_1d_row()
      • print_element_fractions_table()
      • print_single_separator()
      • print_double_separator()
      • AlphabetMapper
      • load_configurations_from_json()
      • extract_spectral_data()
      • make_unique_path()
      • get_sample_dir()
      • load_msa()
      • draw_scalebar()
      • Prompt_User
      • RefLineError
      • MissingHintError
      • EMError
      • EDSError